Title Journal Year
Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs PLoS Genetics 2023
FOXO1 and FOXO3 cooperatively regulate innate lymphoid cell development Frontiers in immunology 2022
Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability Nature Communications 2022
A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component Molecular Ecology 2022
Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma Blood Advances 2022
FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors Frontiers in Immunology 2022
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species BMC bioinformatics 2022
Genetic barriers to historical gene flow between cryptic species of alpine bumblebees revealed by comparative population genomics Molecular biology and evolution 2021
Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations Nature communications 2021
DNA metabarcoding for quality control of basil, Oregano, and Paprika Frontiers in plant science 2021
The ABCC4 gene is associated with pyometra in golden retriever dogs Scientific Reports 2021
Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei Scientific Reports 2020
Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin Immunogenetics 2020
Pre-extinction demographic stability and genomic signatures of adaptation in the woolly rhinoceros Current Biology 2020
Analysing the joint effect of rare and common variants on human traits, using whole-genome sequencing data and a gene-based approach, increases the power to identify genetic effects 2019
SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine OsteosarcomaMutational Landscape in Canine Osteosarcoma Cancer research 2018
Predicting post-translational modifications from local sequence fragments using machine learning algorithms: Overview and best practices Prediction of Protein Secondary Structure 2017
A Model-Free Approach for Detecting Genomic Regions of Deep Divergence Using the Distribution of Haplotype Distances bioRxiv 2017
Effect of breed on plasma endothelin-1 concentration, plasma renin activity, and serum cortisol concentration in healthy dogs Journal of veterinary internal medicine 2016
Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease BMC genomics 2016
Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dog BMC Genetics 2016
The shepherds’ tale: A genome-wide study across 9 dog breeds implicates two loci in the regulation of fructosamine serum concentration in Belgian shepherds PloS one 2015
Genome-wide analyses suggest mechanisms involving early B-cell development in canine IgA deficiency PLoS One 2015
Cgmisc: Enhanced genome-wide association analyses and visualization Bioinformatics 2015
A multi-breed genome-wide association analysis for canine hypothyroidism identifies a shared major risk locus on CFA12 PLoS One 2015
A risk haplotype within the PKP2 locus shows association to Canine Atopic Dermatitis and contains cell-type specific enhancers 2015
Correction: Genome-Wide Analyses Suggest Mechanisms Involving Early B-Cell Development in Canine IgA Deficiency Plos one 2015
Exploring weight data on over 100,000 Swedish dogs of various breeds Acta Veterinaria Scandinavica 2015
Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis Plos Genetics 2015
Ensemble learning prediction of protein–protein interactions using proteins functional annotations Molecular BioSystems 2014
Breed differences in natriuretic peptides in healthy dogs Journal of Veterinary Internal Medicine 2014
Evaluation of machine learning algorithms on protein-protein interactions 2014
Breed Differences in Concentrations of Neuroendocrines and Cortisol in Healthy Dogs Journal of Veterinary Internal Medicine 2014
Breed differences in concentrations of circulating vasoactive peptides and cortisol in healthy dogs Journal of veterinary internal medicine 2014
Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis PLoS genetics 2013
Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands Molecular ecology 2013
Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data Frontiers in genetics 2013
PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties Frontiers in genetics 2013
MAPfastR: quantitative trait loci mapping in outbred line crosses G3: Genes, Genomes, Genetics 2013
Higher order interactions: detection of epistasis using machine learning and evolutionary computation Genome-Wide Association Studies and Genomic Prediction 2013
Thorough investigation of a canine autoinflammatory disease (AID) confirms one main risk locus and suggests a modifier locus for amyloidosis PLoS One 2013
Two loci on chromosome 5 are associated with serum IgE levels in Labrador retrievers PloS one 2012
Effect of landscape in Rana arvalis genetic distance: application of circuit theory. Forest 2012
The Monte Carlo feature selection and interdependency discovery is unbiased Control and Cybernetics 2011
Monte Carlo feature selection and interdependency discovery in supervised classification Advances in Machine Learning II: Dedicated to the Memory of Professor Ryszard S. Michalski 2010
Computational analysis of molecular interaction networks underlying change of HIV-1 resistance to selected reverse transcriptase inhibitors Bioinformatics and biology insights 2010
Advances in Machine Learning 2010
A rough set-based model of HIV-1 reverse transcriptase resistome Bioinformatics and biology insights 2009
Construction of Rough Set-Based Classifiers for Predicting HIV Resistance to Nucleoside Reverse Transcriptase Inhibitors Granular Computing: At the Junction of Rough Sets and Fuzzy Sets 2008
A statistical method for determining importance of variables in an information system 2006
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