Publications
| Title | Journal | Year |
|---|---|---|
| Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs | PLoS Genetics | 2023 |
| FOXO1 and FOXO3 cooperatively regulate innate lymphoid cell development | Frontiers in immunology | 2022 |
| Contribution of rare whole-genome sequencing variants to plasma protein levels and the missing heritability | Nature Communications | 2022 |
| A genomic and morphometric analysis of alpine bumblebees: Ongoing reductions in tongue length but no clear genetic component | Molecular Ecology | 2022 |
| Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma | Blood Advances | 2022 |
| FOXO Dictates Initiation of B Cell Development and Myeloid Restriction in Common Lymphoid Progenitors | Frontiers in Immunology | 2022 |
| GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species | BMC bioinformatics | 2022 |
| Genetic barriers to historical gene flow between cryptic species of alpine bumblebees revealed by comparative population genomics | Molecular biology and evolution | 2021 |
| Genomic insights into the conservation status of the world’s last remaining Sumatran rhinoceros populations | Nature communications | 2021 |
| DNA metabarcoding for quality control of basil, Oregano, and Paprika | Frontiers in plant science | 2021 |
| The ABCC4 gene is associated with pyometra in golden retriever dogs | Scientific Reports | 2021 |
| Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei | Scientific Reports | 2020 |
| Transcriptomes from German shepherd dogs reveal differences in immune activity between atopic dermatitis affected and control skin | Immunogenetics | 2020 |
| Pre-extinction demographic stability and genomic signatures of adaptation in the woolly rhinoceros | Current Biology | 2020 |
| Analysing the joint effect of rare and common variants on human traits, using whole-genome sequencing data and a gene-based approach, increases the power to identify genetic effects | 2019 | |
| SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine OsteosarcomaMutational Landscape in Canine Osteosarcoma | Cancer research | 2018 |
| Predicting post-translational modifications from local sequence fragments using machine learning algorithms: Overview and best practices | Prediction of Protein Secondary Structure | 2017 |
| A Model-Free Approach for Detecting Genomic Regions of Deep Divergence Using the Distribution of Haplotype Distances | bioRxiv | 2017 |
| Effect of breed on plasma endothelin-1 concentration, plasma renin activity, and serum cortisol concentration in healthy dogs | Journal of veterinary internal medicine | 2016 |
| Absolute quantification reveals the stable transmission of a high copy number variant linked to autoinflammatory disease | BMC genomics | 2016 |
| Multiple regulatory variants located in cell type-specific enhancers within the PKP2 locus form major risk and protective haplotypes for canine atopic dermatitis in German shepherd dog | BMC Genetics | 2016 |
| The shepherds’ tale: A genome-wide study across 9 dog breeds implicates two loci in the regulation of fructosamine serum concentration in Belgian shepherds | PloS one | 2015 |
| Genome-wide analyses suggest mechanisms involving early B-cell development in canine IgA deficiency | PLoS One | 2015 |
| Cgmisc: Enhanced genome-wide association analyses and visualization | Bioinformatics | 2015 |
| A multi-breed genome-wide association analysis for canine hypothyroidism identifies a shared major risk locus on CFA12 | PLoS One | 2015 |
| A risk haplotype within the PKP2 locus shows association to Canine Atopic Dermatitis and contains cell-type specific enhancers | 2015 | |
| Correction: Genome-Wide Analyses Suggest Mechanisms Involving Early B-Cell Development in Canine IgA Deficiency | Plos one | 2015 |
| Exploring weight data on over 100,000 Swedish dogs of various breeds | Acta Veterinaria Scandinavica | 2015 |
| Correction: Genome-Wide Analysis in German Shepherd Dogs Reveals Association of a Locus on CFA 27 with Atopic Dermatitis | Plos Genetics | 2015 |
| Ensemble learning prediction of protein–protein interactions using proteins functional annotations | Molecular BioSystems | 2014 |
| Breed differences in natriuretic peptides in healthy dogs | Journal of Veterinary Internal Medicine | 2014 |
| Evaluation of machine learning algorithms on protein-protein interactions | 2014 | |
| Breed Differences in Concentrations of Neuroendocrines and Cortisol in Healthy Dogs | Journal of Veterinary Internal Medicine | 2014 |
| Breed differences in concentrations of circulating vasoactive peptides and cortisol in healthy dogs | Journal of veterinary internal medicine | 2014 |
| Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis | PLoS genetics | 2013 |
| Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands | Molecular ecology | 2013 |
| Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data | Frontiers in genetics | 2013 |
| PASE: a novel method for functional prediction of amino acid substitutions based on physicochemical properties | Frontiers in genetics | 2013 |
| MAPfastR: quantitative trait loci mapping in outbred line crosses | G3: Genes, Genomes, Genetics | 2013 |
| Higher order interactions: detection of epistasis using machine learning and evolutionary computation | Genome-Wide Association Studies and Genomic Prediction | 2013 |
| Thorough investigation of a canine autoinflammatory disease (AID) confirms one main risk locus and suggests a modifier locus for amyloidosis | PLoS One | 2013 |
| Two loci on chromosome 5 are associated with serum IgE levels in Labrador retrievers | PloS one | 2012 |
| Effect of landscape in Rana arvalis genetic distance: application of circuit theory. | Forest | 2012 |
| The Monte Carlo feature selection and interdependency discovery is unbiased | Control and Cybernetics | 2011 |
| Monte Carlo feature selection and interdependency discovery in supervised classification | Advances in Machine Learning II: Dedicated to the Memory of Professor Ryszard S. Michalski | 2010 |
| Computational analysis of molecular interaction networks underlying change of HIV-1 resistance to selected reverse transcriptase inhibitors | Bioinformatics and biology insights | 2010 |
| Advances in Machine Learning | 2010 | |
| A rough set-based model of HIV-1 reverse transcriptase resistome | Bioinformatics and biology insights | 2009 |
| Construction of Rough Set-Based Classifiers for Predicting HIV Resistance to Nucleoside Reverse Transcriptase Inhibitors | Granular Computing: At the Junction of Rough Sets and Fuzzy Sets | 2008 |
| A statistical method for determining importance of variables in an information system | 2006 |
No matching items